Command Line Interface
The biobricks cli has global and local commands.
Commands like configure, version, install that are not specific to a directory.
When using a command like install, uninstall and assets, you can use a brickref to refer to the asset you want to install.
Run biobricks with no commands for a help message.
Usage: biobricks [OPTIONS] COMMAND [ARGS]...
--help Show this message and exit.
GLOBAL: modify global config and installed bricks:
configure configure brick path and token
install Install a data dependency
uninstall Uninstall a data dependency
assets List assets in a data dependency
version Get version and check for updates
LOCAL: build new bricks and manage their dependencies:
init Initialize a .bb directory for data dependencies
add Import a data dependency
pull install local dependencies
status Show the status of the local brick
Commands for building a new brick with dependencies on other bricks.
Initializes a new brick repository by creating a .bb directory in the current directory and adding .bb/dependencies.txt
$ biobricks init
Adds a brickref to the dependencies.txt file.
$ biobricks add <brickref>
Installs all the bricks references in the dependencies.txt.
$ biobricks pull