How does it work?
Biobricks.ai is a data-registry that relies on DVC to allow users to quickly download versioned data assets.
When Biobricks is installed and configured a biobricks.ai token and local BBLIB path are chosen. Data assets are stored in the BBLIB with a simple versioning scheme.
Installing Bricks Globally
Every biobrick is a git repo. When a brick is installed, that git repo is cloned into the BBLIB.
Every biobrick is also a dvc repository. When a brick is installed, the cache of the brick is set to the BBLIB / cache directory. This means that every data asset stored in a brick has a symlink to the BBLIB / cache directory. This helps with data deduplication.
When a brick is loaded in python or R, the respective package reviews the brick’s path in the BBLIB and creates objects based on the cached files in the dvc cache and their paths.
Today, each biobrick can only store parquet files, a special file format for tabular data. In the future, more file formats will be added to the biobricks system.